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Palm tree mapping using deep learning on aerial images

When thinking of palm trees, most people start dreaming of beautiful beaches or stunning locations. But besides this ornamental aspect, palm trees also have a vast socio-economic value. Notwithstanding their beauty and their tasty fruits, many palm trees have to deal with enemy bugs causing severe damage and even death ends.

Therefore, when I think about palm trees, I think about how to combat these enemies, in particular the lethal pest of the Red Palm Weevil (RPW), and how we can use remote sensing technology to detect it and safeguard the existence of the palms. So I am happy to share more about the ongoing PalmWatch project and how we have created a palm detection model using aerial images and deep learning.

Red Palm Weevil, a little creature able to create major impact

Date palms and canary palms have been exploited since ancient times in commerce, nutrition, landscape enhancement, and other activities in the Mediterranean, Middle East, and North Africa regions. Currently, it is estimated that they cover more than 1.3 million hectares. Unfortunately, the Red Palm Weevil (RPW), a lethal pest that threatens these palms, has spread worldwide. This could unfold a future crisis since palms represent high-valued assets in the socio-economic development of the above mentioned regions.

As palm trees are widely spread over large territories across the globe, it is hardly possible to detect each palm tree and visually check on symptoms caused by the RPW. But what if we used earth observation data and remote sensing technology to detect and scan palm trees? In the PalmWatch project, we are currently evaluating the potential of, for example, using drone-based image processing to detect this lethal pest and set up an automated processing chain and visualization platform to indicate infestation probabilities.

PalmWatch_RPWcloseup

Pictures of weevils captured in the field while closely examining infested trees

First things first! Detecting palm trees timely and efficiently

As the RPW can affect palms tremendously, it is vital to detect the infestation in an early stage. With few externally-visible signs, and palms largely distributed in space, remote sensing could provide an efficient and accurate way to monitor the health of palms at a large scale. But before we can set up such a processing chain and visualization platform, three major tasks have to be fulfilled:

  1. Large scale palm tree mapping (including date and canary palms)
  2. Detection of RPW affected palms
  3. Classification of the RPW infestation level

About a year ago, in June 2019, we started step 1 by creating a palm detection model using deep learning. The fact is that timely detection is crucial for the survival of the palm trees but information on their number and distribution is scarce. Thus, a close observation against the pest is not currently possible. So, we started by training a palm detector based on deep learning to geolocate individual palm trees on aerial RGB imagery.

Aerial images and deep learning for large scale mapping

Let me explain how we developed this palm detector.  First, we obtained several aerial images over the Spanish region of the Alicante province, covering more than five thousand square kilometers. We selected this region as it is an iconic place for date and canary palms. We started by manually annotating the crowns of date and canary palms in some of those images. This allowed us to train our deep-learning object detector so that it can classify and locate palm crowns automatically. This detector is based on convolutional neural networks (CNN), which have been promoted in the last few years in the remote sensing domain since they are designed to process data in the form of multiple arrays as multi-band remote sensing data. Also, as CNN directly learn from imagery, the expert knowledge to extract features necessary in conventional machine learning methods is eliminated.

PalmWatch_Detection1PalmWatch_Detection2Examples of palm crown detection - Original data source: Ortofoto RGB 2018 CC BY 4.0
© Institut Cartogràfic Valencià, Generalitat; OrtoPNOA 2018 CC BY 4.0
www.scne.es.

 

Preliminary results let us state that the trained palm detection model provides a fast method to geolocate isolated and densely planted palms from aerial high-resolution RGB images. Moreover, it allows conducting the palm tree inventory at an expanded scale and with a reduced cost in comparison with tree inventory employing field-based measurements.
The performance results show a mapping capacity to geolocate palms in different scenes (e.g., nurseries, parks, gardens), achieving a precision of 86%. In the next months, we will map the date and canary palms over the entire Alicante province so that this map can be used as a baseline for the long-term monitoring of palms health. This baseline will allow us to take on the next step of the PalmWatch project, which is the detection of infested palms. Here below two examples of palm crown detections.

Detection of affected palms and classify infestation level

But our ultimate goal is still to detect RPW affected palms and classify their infestation level. Currently, regular field and flight campaigns are being executed in Elche town, located in the Alicante province. The aim is to capture detailed aerial imagery and to monitor the health state of date and canary palm trees. With a team of researchers and RPW experts, palm trees are inspected to find symptoms related to RPW infestation.

PalmWatch_FieldCampaignPictures of our field campaign in Alicante, Spain in July 2019 where we inspected date and canary palms

As a next step, the spectral and thermal information we expect to acquire from the aerial images will be analyzed to develop an RPW detection algorithm. The palm tree maps created in the first step will already give an insight into the possible spread of the RPW. If the results of the spectral and thermal analyses are satisfying, then new flight campaigns can be advised in specific regions where the pest pressure is high. As such, all localized palms will be classified in different health classes (healthy, infested, and dead) and visualized in an RPW probability map. This will make the outcome of the project available for non-remote sensing experts, who will benefit the most of such maps.

Follow us via our remote sensing blog or via Twitter to stay informed about our next steps and outcome in the PalmWatch project. The first steps are taken in our weevil battle, but we hope to share some additional results soon so that you can keep on dreaming of beautiful beaches with healthy palm trees!

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